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	<title>dennogumi.org &#187; pathway analysis</title>
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		<title>Published! (and it matters more)</title>
		<link>http://www.dennogumi.org/2009/01/published-and-it-matters-more</link>
		<comments>http://www.dennogumi.org/2009/01/published-and-it-matters-more#comments</comments>
		<pubDate>Tue, 06 Jan 2009 17:39:39 +0000</pubDate>
		<dc:creator>Einar</dc:creator>
				<category><![CDATA[Science]]></category>
		<category><![CDATA[pathway analysis]]></category>

		<guid isPermaLink="false">http://www.dennogumi.org/?p=489</guid>
		<description><![CDATA[Finally I can lift the curtain of silence and tell the reason why I&#8217;ve been very busy before Christmas: it all lies in the publication of a paper, &#8220;Using Pathway Signatures as Means of Identifying Similarities among Microarray Experiments&#8221;, which &#8230; <a href="http://www.dennogumi.org/2009/01/published-and-it-matters-more">Continue reading <span class="meta-nav">&#8594;</span></a>]]></description>
			<content:encoded><![CDATA[<p>Finally I can lift the curtain of silence and tell the reason why I&#8217;ve been very busy before Christmas: it all lies in the publication of a paper, &#8220;Using Pathway Signatures as Means of Identifying Similarities among Microarray Experiments&#8221;, <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0004128">which is finally out on this week&#8217;s issue of <em>PLoS ONE</em></a>. It&#8217;s different from <a href="http://www.dennogumi.org/2008/01/phd">the previous paper I mentioned</a> (which was not my first publication, either), for two main reasons:</p>
<ul>
<li>It&#8217;s a bioinformatics paper;</li>
<li>I am <strong>first author</strong> there.</li>
</ul>
<p>The second point is very important because usually for a person doing bioinformatics is more difficult to end up as first author in a paper, since most we do is &#8220;something in the middle&#8221; like data analysis. Therefore, this paper is quite important for me. Also, it deals with an interest of mine, mainly analysis of biological networks using high-throughput platforms such as microarrays. Actually I&#8217;m also interested in network <em>reconstruction</em>, but I need to study far more than what I&#8217;m doing right now. </p>
<p>In any case, let&#8217;s hope this is the first of a (hopefully long) series!</p>
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